Hello, Thank you for posting your success with SPI and logibone. I also have managed to get SPI working on the logibone R1. Since SPI1 on beaglebone is used for both programming and communicating with FPGA, I had to add a bone-pinmux-helper overlay to the DTS. Please see my DTS file attached. I had to modify logi_loader script to add the multiplexor when programming: